We can see that in the first and the last configuration, we are shown two corners both of which have 2 and 3, and the other side is occupied by 4 and 1 in some order. 

Two adjacent faces only share one edge and two corners.

From this we can deduce that 4 and 1 would be on the opposite faces. 

We can use the other clues to figure out the complete configuration of the cube, and open it to get the following faces:

We can see that face 1 is opposite 4. 

Therefore, Option D is the correct answer.